IMPORTANT NOTE!!
TogoMCP is now maintained at DBCLS. This repository will no longer be updated.
TogoMCP: MCP server for the RDF Portal databases
This MCP server executes SPARQL queries against various biological/biomedical RDF databases provided at the RDF Portal.
Additional functionalities are also provided that interact with a few REST APIs at various sites.
Installation
Python (>= 3.11)
uv package manager
Install uv (if not yet installed)
# macOS/Linux
curl -LsSf https://astral.sh/uv/install.sh | sh
# Windows
> powershell -ExecutionPolicy ByPass -c "irm https://astral.sh/uv/install.ps1 | iex"
Install RDFPortal-MCP server
# Clone the repository
git clone https://github.com/arkinjo/togo-mcp.git
cd togo-mcp
# Install dependencies
uv sync
Configuration
Claude Desktop Configuration
Change the file paths as appropriate.
macOS: ~/Library/Application Support/Claude/claude_desktop_config.json
Windows: ~\AppData\Roaming\Claude\claude_desktop_config.json
{
"mcpServers": {
"togomcp": {
"command": "{path to uv}/uv",
"args":[
"--directory",
"{path to togo-mcp}/togo-mcp",
"run",
"togo-mcp-server"
]
}
}
}
"Admin" mode
In the above setting, you can also use togo-mcp-admin instead of togo-mcp-server, which includes additional MCP tools for generating new MIE files.