TogoMCP

# IMPORTANT NOTE!! TogoMCP is now maintained at [DBCLS](https://github.com/dbcls/togo-mcp). This repository will no longer be updated. # TogoMCP: MCP server for the RDF Portal databases This MCP server executes SPARQL queries against various biological/biomedical RDF databases provided at the [RDF Portal](https://rdfportal.org/). Additional functionalities are also provided that interact with a few REST APIs at various sites. ## Installation - Python (>= 3.11) - [uv](https://docs.astral.sh/uv/) package manager ### Install uv (if not yet installed) ```bash # macOS/Linux curl -LsSf https://astral.sh/uv/install.sh | sh # Windows > powershell -ExecutionPolicy ByPass -c "irm https://astral.sh/uv/install.ps1 | iex" ``` ### Install RDFPortal-MCP server ```bash # Clone the repository git clone https://github.com/arkinjo/togo-mcp.git cd togo-mcp # Install dependencies uv sync ``` ## Configuration ### Claude Desktop Configuration Change the file paths as appropriate. **macOS**: `~/Library/Application Support/Claude/claude_desktop_config.json` **Windows**: `~\AppData\Roaming\Claude\claude_desktop_config.json` ```json { "mcpServers": { "togomcp": { "command": "{path to uv}/uv", "args":[ "--directory", "{path to togo-mcp}/togo-mcp", "run", "togo-mcp-server" ] } } } ``` #### "Admin" mode In the above setting, you can also use `togo-mcp-admin` instead of `togo-mcp-server`, which includes additional MCP tools for generating new MIE files.