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PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> PREFIX owl: <http://www.w3.org/2002/07/owl#> PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> PREFIX dct: <http://purl.org/dc/terms/> PREFIX obo: <http://purl.obolibrary.org/obo/> PREFIX fams: <http://purl.jp/bio/01/famsbase/> PREFIX famso: <http://purl.jp/bio/01/famsbase/ontology/> PREFIX edam: <http://edamontology.org/> PREFIX refseq: <http://identifiers.org/refseq/> PREFIX up: <http://identifiers.org/uniprot/> PREFIX faldo: <http://biohackathon.org/resource/faldo#> PREFIX pdb: <http://identifiers.org/pdb/> <FAMSBASEEntryShape> { a [ famso:Protein3DModel ] ; dct:identifier xsd:string ; fams:hasModel @<ProteinStructureShape> ; famso:hasTemplateForAlignedRegion IRI } <ProteinStructureShape> { a [ edam:data_1460 ] ; edam:is_output_of @<ProteinModellingShape> } <ProteinModellingShape> { a [ edam:operation_0477 ] ; edam:hasInput IRI ; edam:hasInput @<InputAlignmentShape> } <InputAlignmentShape> { a [ edam:data_0863 ] ; famso:evalue xsd:float ; famso:identity xsd:integer ; famso:hasRegion @<PDBRegionShape> ; famso:hasRegion @<RefSeqRegionShape> ; edam:is_output_of @<LocalAlignmentShape> } <PDBRegionShape> { a [ faldo:Region ] ; faldo:begin @<FaldoBeginShape> ; faldo:end @<FaldoEndShape> } <RefSeqRegionShape> { a [ faldo:Region ] ; faldo:begin @<FaldoBeginShape> ; faldo:end @<FaldoEndShape> } <FaldoBeginShape> { a [ faldo:Position faldo:ExactPosition ] ; faldo:position xsd:integer ; faldo:reference IRI } <FaldoEndShape> { a [ faldo:Position faldo:ExactPosition ] ; faldo:position xsd:integer ; faldo:reference IRI } <LocalAlignmentShape> { a [ edam:operation_0495 ] ; edam:hasInput IRI ; edam:hasInput @<NASequenceShape> } <NASequenceShape> { a [ edam:data_2976 ] ; rdfs:seeAlso IRI ; rdfs:seeAlso IRI }

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