TogoMCP

PREFIX idtax: <http://identifiers.org/taxonomy/> PREFIX idup: <http://identifiers.org/uniprot/> PREFIX ncit: <http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl#> PREFIX pxd: <http://proteomecentral.proteomexchange.org/dataset/> PREFIX up: <http://purl.uniprot.org/uniprot/> PREFIX bid: <http://rdf.jpostdb.org/bid/> PREFIX jpostdb: <http://rdf.jpostdb.org/entry/> PREFIX jpost: <http://rdf.jpostdb.org/ontology/jpost.owl#> PREFIX unimod: <http://www.unimod.org/obo/unimod.obo#> PREFIX vcard: <http://www.w3.org/2006/vcard/ns#> PREFIX jporep: <https://repository.jpostdb.org/entry/> PREFIX faldo: <http://biohackathon.org/resource/faldo#> PREFIX obo: <http://purl.obolibrary.org/obo/> PREFIX dct: <http://purl.org/dc/terms/> PREFIX sio: <http://semanticscience.org/resource/> PREFIX rdf: <http://www.w3.org/1999/02/22-rdf-syntax-ns#> PREFIX rdfs: <http://www.w3.org/2000/01/rdf-schema#> PREFIX foaf: <http://xmlns.com/foaf/0.1/> PREFIX xsd: <http://www.w3.org/2001/XMLSchema#> <JpostProjectShape> { a [ jpost:Project ] ; dct:contributor BNode + ; dct:contributor BNode + ; dct:date xsd:date ; dct:dateSubmitted xsd:date ; dct:description xsd:string ; dct:identifier xsd:string ; dct:title xsd:string ; jpost:hasDataset @<JpostDatasetShape> + ; rdfs:label xsd:string ; rdfs:seeAlso IRI + ; foaf:page IRI } <JpostDatasetShape> { a [ jpost:Dataset ] ; dct:identifier xsd:string ; jpost:hasProfile @<ProfileShape> ; jpost:hasProtein @<ProteinShape> + ; sio:SIO_000216 BNode + ; sio:SIO_000216 BNode + ; sio:SIO_000216 BNode + ; sio:SIO_000216 BNode + ; sio:SIO_000216 BNode + ; sio:SIO_000216 BNode + ; sio:SIO_000216 BNode + } <ProteinShape> { a [ jpost:Protein obo:MS_1002401 ] ; dct:identifier xsd:string ; jpost:hasDatabaseSequence IRI ; jpost:hasIsoform IRI ; jpost:hasPeptideEvidence BNode + ; jpost:inProteinGroup IRI ; sio:SIO_000216 BNode + ; sio:SIO_000216 BNode + ; rdfs:label xsd:string ; rdfs:seeAlso IRI + } <PeptideShape> { a [ jpost:Peptide ] ; dct:identifier xsd:string ; jpost:hasPsm @<PeptideSpectrumMatchShape> + ; jpost:hasSequence BNode ; sio:SIO_000216 BNode + ; sio:SIO_000216 BNode + ; sio:SIO_000216 BNode + } <PeptideSpectrumMatchShape> { a [ jpost:PeptideSpectrumMatch ] ; dct:identifier xsd:string ; jpost:hasSpectrum @<SpectrumShape> ; sio:SIO_000216 BNode + ; sio:SIO_000216 BNode + ; sio:SIO_000216 BNode + ; sio:SIO_000216 BNode + ; sio:SIO_000216 BNode + ; jpost:hasModification IRI * } <PhosphoShape> { a [ unimod:UNIMOD_21 ] ; jpost:modificationSite xsd:string ; faldo:location BNode } <AcetylShape> { a [ unimod:UNIMOD_1 ] ; jpost:modificationSite xsd:string ; faldo:location BNode } <OxidationShape> { a [ unimod:UNIMOD_35 ] ; jpost:modificationSite xsd:string ; faldo:location BNode } <SpectrumShape> { a [ jpost:Spectrum ] ; jpost:inRawData IRI ; rdfs:label xsd:string } <ProfileShape> { a [ jpost:Profile ] ; jpost:hasSample @<SampleShape> ; jpost:hasEnzymeAndModification @<EnzymeModificationShape> ; jpost:hasFractionation @<FractionationShape> ; jpost:hasMsMode @<MsInstrumentModeShape> ; jpost:hasRawData @<RawDataShape> + } <SampleShape> { a [ sio:SIO_001050 jpost:Sample ] ; jpost:cellLine BNode ; jpost:sampleType IRI ; rdfs:comment xsd:string ; jpost:species IRI } <EnzymeModificationShape> { a [ jpost:EnzymeAndModification ] ; jpost:enzyme IRI + ; jpost:species IRI ; jpost:variableModification BNode } <FractionationShape> { a [ jpost:Fractionation ] ; jpost:hasFractionationType BNode } <MsInstrumentModeShape> { a [ jpost:MsMode ] ; jpost:instrument IRI ; jpost:instrumentMode IRI ; jpost:quantificationMethod IRI ; rdfs:comment xsd:string } <RawDataShape> { a [ jpost:RawData ] ; rdfs:label xsd:string }