Ensembl MCP Server

MIT License

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map_coordinates

Convert genomic coordinates between different genome assemblies using specified regions and target assemblies. Ideal for researchers working with species-specific data and Ensembl REST API integrations.

Instructions

Convert coordinates between genome assemblies

Input Schema

Name	Required	Description
`region`	Yes	Genomic region (chr:start-end)
`species`	No	Species name (default: homo_sapiens)
`target_assembly`	Yes	Target assembly name

Input Schema (JSON Schema)

{
  "properties": {
    "region": {
      "description": "Genomic region (chr:start-end)",
      "type": "string"
    },
    "species": {
      "description": "Species name (default: homo_sapiens)",
      "type": "string"
    },
    "target_assembly": {
      "description": "Target assembly name",
      "type": "string"
    }
  },
  "required": [
    "region",
    "target_assembly"
  ],
  "type": "object"
}

Install Server

HTTP connection URL

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