Ensembl MCP Server

MIT License

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batch_gene_lookup

Search for multiple genes in parallel within the Ensembl MCP Server. Input gene IDs and species to retrieve genomic data in JSON or XML format, supporting efficient bulk gene lookup.

Instructions

Look up multiple genes simultaneously

Input Schema

Name	Required	Description
`format`	No	Output format (default: json)
`gene_ids`	Yes	List of gene IDs (max 200)
`species`	No	Species name (default: homo_sapiens)

Input Schema (JSON Schema)

{
  "properties": {
    "format": {
      "description": "Output format (default: json)",
      "enum": [
        "json",
        "xml"
      ],
      "type": "string"
    },
    "gene_ids": {
      "description": "List of gene IDs (max 200)",
      "items": {
        "type": "string"
      },
      "maxItems": 200,
      "minItems": 1,
      "type": "array"
    },
    "species": {
      "description": "Species name (default: homo_sapiens)",
      "type": "string"
    }
  },
  "required": [
    "gene_ids"
  ],
  "type": "object"
}

Install Server

HTTP connection URL

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