Ensembl MCP Server

MIT License

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batch_gene_lookup

Query multiple gene IDs at once using species-specific genomic data from the Ensembl REST API for detailed biological annotations. Supports JSON and XML output formats.

Instructions

Look up multiple genes simultaneously

Input Schema

Name	Required	Description
`format`	No	Output format (default: json)
`gene_ids`	Yes	List of gene IDs (max 200)
`species`	No	Species name (default: homo_sapiens)

Input Schema (JSON Schema)

{
  "properties": {
    "format": {
      "description": "Output format (default: json)",
      "enum": [
        "json",
        "xml"
      ],
      "type": "string"
    },
    "gene_ids": {
      "description": "List of gene IDs (max 200)",
      "items": {
        "type": "string"
      },
      "maxItems": 200,
      "minItems": 1,
      "type": "array"
    },
    "species": {
      "description": "Species name (default: homo_sapiens)",
      "type": "string"
    }
  },
  "required": [
    "gene_ids"
  ],
  "type": "object"
}

Install Server

HTTP connection URL

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