Ensembl MCP Server

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get_variants

Retrieve genetic variants within a specified genomic region for a given species. Filter results by consequence types and export in JSON or VCF format using Ensembl MCP Server.

Instructions

Get genetic variants in a genomic region

Input Schema

Name	Required	Description
`consequence_type`	No	Filter by consequence types
`format`	No	Output format (default: json)
`region`	Yes	Genomic region (chr:start-end)
`species`	No	Species name (default: homo_sapiens)

Input Schema (JSON Schema)

{
  "properties": {
    "consequence_type": {
      "description": "Filter by consequence types",
      "items": {
        "type": "string"
      },
      "type": "array"
    },
    "format": {
      "description": "Output format (default: json)",
      "enum": [
        "json",
        "vcf"
      ],
      "type": "string"
    },
    "region": {
      "description": "Genomic region (chr:start-end)",
      "type": "string"
    },
    "species": {
      "description": "Species name (default: homo_sapiens)",
      "type": "string"
    }
  },
  "required": [
    "region"
  ],
  "type": "object"
}

This server cannot be installed

Other Tools from Ensembl MCP Server

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ensembl_variation
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search_genes
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ensembl_lookup
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variant_searcher
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get_region_variants
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