Ensembl MCP Server

MIT License

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get_xrefs

Retrieve external database cross-references for genes, including transcript and translation xrefs, using Ensembl gene IDs and optional species or database filters.

Instructions

Get external database cross-references for genes

Input Schema

Name	Required	Description
`all_levels`	No	Include transcript and translation xrefs (default: false)
`external_db`	No	Specific external database (optional)
`gene_id`	Yes	Ensembl gene ID
`species`	No	Species name (default: homo_sapiens)

Input Schema (JSON Schema)

{
  "properties": {
    "all_levels": {
      "description": "Include transcript and translation xrefs (default: false)",
      "type": "boolean"
    },
    "external_db": {
      "description": "Specific external database (optional)",
      "type": "string"
    },
    "gene_id": {
      "description": "Ensembl gene ID",
      "type": "string"
    },
    "species": {
      "description": "Species name (default: homo_sapiens)",
      "type": "string"
    }
  },
  "required": [
    "gene_id"
  ],
  "type": "object"
}

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