Ensembl MCP Server

MIT License

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get_motif_features

Identify transcription factor binding motifs in specified genomic regions using the Ensembl MCP Server. Input region and species to analyze binding patterns with optional custom binding matrices.

Instructions

Get transcription factor binding motifs in genomic region

Input Schema

Name	Required	Description
`binding_matrix`	No	Specific binding matrix (optional)
`region`	Yes	Genomic region (chr:start-end)
`species`	No	Species name (default: homo_sapiens)

Input Schema (JSON Schema)

{
  "properties": {
    "binding_matrix": {
      "description": "Specific binding matrix (optional)",
      "type": "string"
    },
    "region": {
      "description": "Genomic region (chr:start-end)",
      "type": "string"
    },
    "species": {
      "description": "Species name (default: homo_sapiens)",
      "type": "string"
    }
  },
  "required": [
    "region"
  ],
  "type": "object"
}

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HTTP connection URL

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