Ensembl MCP Server

MIT License

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get_gene_tree

Retrieve a phylogenetic tree for a gene family using a specified Ensembl gene ID. Supports multiple formats like JSON, Newick, and PhyloXML. Optionally, include a species name or clusterset ID for tailored results.

Instructions

Get phylogenetic tree for gene family

Input Schema

Name	Required	Description
`clusterset_id`	No	Specific clusterset ID (optional)
`format`	No	Tree format (default: json)
`gene_id`	Yes	Ensembl gene ID
`species`	No	Species name (default: homo_sapiens)

Input Schema (JSON Schema)

{
  "properties": {
    "clusterset_id": {
      "description": "Specific clusterset ID (optional)",
      "type": "string"
    },
    "format": {
      "description": "Tree format (default: json)",
      "enum": [
        "json",
        "newick",
        "phyloxml"
      ],
      "type": "string"
    },
    "gene_id": {
      "description": "Ensembl gene ID",
      "type": "string"
    },
    "species": {
      "description": "Species name (default: homo_sapiens)",
      "type": "string"
    }
  },
  "required": [
    "gene_id"
  ],
  "type": "object"
}

Install Server

HTTP connection URL

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