Ensembl MCP Server

MIT License

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get_transcripts

Retrieve all transcripts for a given gene, including detailed structural information, using the Ensembl MCP Server. Specify gene ID, species, and optional canonical-only filter for precise results.

Instructions

Get all transcripts for a gene with detailed structure

Input Schema

Name	Required	Description
`canonical_only`	No	Return only canonical transcript (default: false)
`gene_id`	Yes	Ensembl gene ID
`species`	No	Species name (default: homo_sapiens)

Input Schema (JSON Schema)

{
  "properties": {
    "canonical_only": {
      "description": "Return only canonical transcript (default: false)",
      "type": "boolean"
    },
    "gene_id": {
      "description": "Ensembl gene ID",
      "type": "string"
    },
    "species": {
      "description": "Species name (default: homo_sapiens)",
      "type": "string"
    }
  },
  "required": [
    "gene_id"
  ],
  "type": "object"
}

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