Ensembl MCP Server

MIT License

Overview InspectNew Schema Related Servers Reviews Score

get_transcripts

Retrieve all transcripts for a specific gene, including structural details, using the Ensembl MCP Server. Specify a gene ID and optionally filter for canonical transcripts or adjust species.

Instructions

Get all transcripts for a gene with detailed structure

Input Schema

Name	Required	Description
`canonical_only`	No	Return only canonical transcript (default: false)
`gene_id`	Yes	Ensembl gene ID
`species`	No	Species name (default: homo_sapiens)

Input Schema (JSON Schema)

{
  "properties": {
    "canonical_only": {
      "description": "Return only canonical transcript (default: false)",
      "type": "boolean"
    },
    "gene_id": {
      "description": "Ensembl gene ID",
      "type": "string"
    },
    "species": {
      "description": "Species name (default: homo_sapiens)",
      "type": "string"
    }
  },
  "required": [
    "gene_id"
  ],
  "type": "object"
}

Install Server

HTTP connection URL

Other Tools from Ensembl MCP Server

Related Tools

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/Augmented-Nature/Ensembl-MCP-Server'

If you have feedback or need assistance with the MCP directory API, please join our Discord server