Ensembl MCP Server

MIT License

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batch_sequence_fetch

Retrieve DNA or protein sequences for multiple genomic regions or feature IDs in JSON or FASTA format, supporting species-specific queries via the Ensembl REST API.

Instructions

Fetch sequences for multiple regions or features

Input Schema

Name	Required	Description
`format`	No	Output format (default: fasta)
`regions`	Yes	List of regions or feature IDs (max 50)
`species`	No	Species name (default: homo_sapiens)

Input Schema (JSON Schema)

{
  "properties": {
    "format": {
      "description": "Output format (default: fasta)",
      "enum": [
        "json",
        "fasta"
      ],
      "type": "string"
    },
    "regions": {
      "description": "List of regions or feature IDs (max 50)",
      "items": {
        "type": "string"
      },
      "maxItems": 50,
      "minItems": 1,
      "type": "array"
    },
    "species": {
      "description": "Species name (default: homo_sapiens)",
      "type": "string"
    }
  },
  "required": [
    "regions"
  ],
  "type": "object"
}

Install Server

HTTP connection URL

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