Ensembl MCP Server

MIT License

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get_cds_sequence

Retrieve the coding sequence (CDS) for a specific transcript using its Ensembl ID, with options to output in JSON or FASTA format.

Instructions

Get coding sequence (CDS) for a transcript

Input Schema

Name	Required	Description
`format`	No	Output format (default: fasta)
`species`	No	Species name (default: homo_sapiens)
`transcript_id`	Yes	Ensembl transcript ID

Input Schema (JSON Schema)

{
  "properties": {
    "format": {
      "description": "Output format (default: fasta)",
      "enum": [
        "json",
        "fasta"
      ],
      "type": "string"
    },
    "species": {
      "description": "Species name (default: homo_sapiens)",
      "type": "string"
    },
    "transcript_id": {
      "description": "Ensembl transcript ID",
      "type": "string"
    }
  },
  "required": [
    "transcript_id"
  ],
  "type": "object"
}

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