uniprot_taxonomy_search
Resolve an organism name to its NCBI taxonomy ID by searching scientific and common names. Returns the numeric ID needed for other UniProt tools.
Instructions
Resolve an organism name to its NCBI taxonomy ID(s) — the numeric ID
other UniProt tools expect (e.g. the organism parameter of
uniprot_search, or organism_id: in a query string). Returns
each match's taxonomy ID, scientific name, common name, and rank
(species / genus / etc.); a name can resolve to multiple IDs when
it's ambiguous (e.g. a genus with several species), so inspect the
rank and full scientific name before picking one. Use this before
filtering any other search by organism if you only know the name,
not the numeric ID.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| size | No | Maximum number of results to return; capped at 500 server-side. | |
| query | Yes | Organism name or partial name to search for, e.g. 'Homo sapiens' or 'coli'. Matches against scientific and common names. | |
| response_format | No | 'markdown' (default) for a human-readable report with a provenance footer, or 'json' for a machine-parseable structured payload with the same data. Any other value is rejected. | markdown |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| result | Yes |