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uniprot_get_subcellular_location

Read-only

Retrieve a UniProt subcellular location term by its SL-ID to get its name, definition, category, GO cross-references, and hierarchical relationships.

Instructions

Fetch a UniProt subcellular-location term by ID (e.g. SL-0039 Cell membrane, SL-0086 Cytoplasm, SL-0191 Nucleus). Returns name, definition, category, GO cross-refs, and the is-a / part-of hierarchy.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
location_idYesUniProt subcellular-location ID, e.g. 'SL-0039' (Cell membrane). Always starts with 'SL-'.
response_formatNo'markdown' (default) for a human-readable report with a provenance footer, or 'json' for a machine-parseable structured payload with the same data. Any other value is rejected.markdown

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already indicate readOnlyHint=true and openWorldHint=true. Description adds useful context about the returned fields (name, definition, category, GO cross-refs, hierarchy), going beyond annotations without contradiction.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two concise sentences: first line states action with examples, second line lists returned content. No filler, front-loaded for quick understanding.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (fetch by ID), output schema exists, and annotations are present, the description fully covers purpose, parameters, and output. No gaps.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 100%, so baseline is 3. Description adds value by explaining the location_id format with examples and clarifying response_format options ('markdown' or 'json'), exceeding schema details.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

Description clearly states 'Fetch a UniProt subcellular-location term by ID', provides specific ID examples (SL-0039, SL-0086, SL-0191), and lists returned data (name, definition, etc.). This distinguishes it from the sibling search tool.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Description implies usage when you have a specific ID, but does not explicitly state when to use vs alternatives like uniprot_search_subcellular_locations. No exclusion criteria are mentioned.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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