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uniprot_get_processing_features

Read-only

Retrieve maturation and processing features for a protein accession, including signal peptides, propeptides, and chains. Used for therapeutic-protein engineering and pathogen-secretion-system analysis.

Instructions

Return the maturation and processing features (signal peptide, propeptide, transit peptide, initiator methionine, chain, peptide). These describe how the translated polypeptide is cleaved and targeted into its mature form — essential for therapeutic-protein engineering and pathogen-secretion-system analysis.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
accessionYes
response_formatNomarkdown

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already indicate read-only and open world. Description adds detail about feature types but no additional behavioral traits like error handling or output structure.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness4/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two sentences, concise and front-loaded with purpose. No superfluous content, though structure could be improved with parameter hints.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given output schema exists, description covers key use cases and feature list. But missing parameter details and behavior for missing accessions slightly detract.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters1/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0% and description does not explain the 'accession' or 'response_format' parameters, leaving the agent without guidance on valid inputs or defaults.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

Clearly states it returns maturation and processing features, listing specific types. Distinguishes from generic sibling 'uniprot_get_features' by specifying the subset, though not explicitly.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Provides use-case context (therapeutic engineering, pathogen secretion) but lacks explicit when-to-use or when-to-avoid compared to other feature tools.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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