Skip to main content
Glama

uniprot_resolve_pdb

Read-only

List PDB structures cross-referenced from a UniProt accession, including method, resolution, and chain coverage for downstream analysis.

Instructions

List every PDB structure cross-referenced from a UniProt entry, with method, resolution, and chain coverage. Faster than parsing the raw cross-references blob — returns a structured list typed for downstream analysis.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
accessionYes
response_formatNomarkdown

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already provide readOnlyHint=true and openWorldHint=true. The description adds that it returns a structured list, but does not disclose any further behavioral traits like rate limits or data freshness. It does not contradict annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is two sentences long, front-loaded with the primary action, and every sentence adds value. There is no redundancy or unnecessary detail.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the existence of an output schema, the description does not need to explain return format. It covers the main functionality, lists output fields, and indicates performance benefit. For a simple tool with one required parameter, the description is sufficiently complete.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters1/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema coverage is 0% and the description provides no explanation for the parameters. Although 'accession' is implied as the UniProt entry identifier from context, it is not stated, and 'response_format' is entirely ignored. The description fails to add meaning beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool lists every PDB structure cross-referenced from a UniProt entry, specifying the output fields (method, resolution, chain coverage). It distinguishes itself from siblings like uniprot_get_cross_refs by claiming to be faster and returning a structured list, making its purpose distinct.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description says it's 'Faster than parsing the raw cross-references blob' which implies a usage context compared to a raw data retrieval, but it does not explicitly name alternatives or state when not to use this tool. The guidance is implied but not fully explicit.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

Install Server

Other Tools

Latest Blog Posts

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/smaniches/uniprot-mcp'

If you have feedback or need assistance with the MCP directory API, please join our Discord server