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uniprot_batch_entries

Read-only

Fetch multiple UniProt entries in a single call, skipping invalid accessions to avoid failures and reduce network round-trips.

Instructions

Fetch multiple entries in a single call. Use this instead of repeated uniprot_get_entry calls when you already have a list of accessions — one network round-trip instead of N, with invalid accessions reported rather than aborting the batch.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
accessionsYesComma-separated UniProt accessions, e.g. 'P04637,P38398'. Invalid accessions are skipped rather than failing the whole call; only the first 100 valid accessions are fetched.
response_formatNo'markdown' (default) for a human-readable report with a provenance footer, or 'json' for a machine-parseable structured payload with the same data. Any other value is rejected.markdown

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior5/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations indicate readOnlyHint and openWorldHint. The description adds important context: invalid accessions are skipped (not aborting), and only the first 100 valid accessions are fetched. No contradiction.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two concise sentences, front-loaded with main purpose, followed by usage guidance and behavioral notes. No unnecessary words.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's complexity (batch operation, two parameters, output schema exists), the description adequately covers usage scenario, failure behavior, and parameter details. It is complete for agent understanding.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 100%, so baseline is 3. The description adds value by clarifying that invalid accessions are skipped and limiting to first 100, and mentioning response_format options. Slightly above baseline.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states 'Fetch multiple entries in a single call', uses a specific verb and resource, and explicitly distinguishes this tool from the sibling 'uniprot_get_entry' by highlighting the batch efficiency.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description explicitly advises using this tool instead of repeated 'uniprot_get_entry' calls when a list of accessions is already available, and it explains the behavior with invalid accessions (skipped, not abort).

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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