Track Experiment Locally
encode_track_experimentSave an ENCODE experiment to a local library with its publications, methods, and pipeline info. Track metadata and associated research for later comparison and citation.
Instructions
Track an ENCODE experiment locally with its publications, methods, and pipeline info.
Fetches full experiment metadata from ENCODE and stores it in a local SQLite database along with any associated publications (PMIDs, DOIs, authors, journal) and pipeline/analysis information (software versions, methods).
This is like adding an experiment to your "library" - similar to Endnote for papers.
WHEN TO USE: Use to save an experiment to your local library with publications and pipeline info. Required before compare or citations. RELATED TOOLS: encode_compare_experiments, encode_get_citations, encode_export_data
Args: accession: ENCODE experiment accession (e.g., "ENCSR133RZO") fetch_publications: Also fetch and store publications/citations (default True) fetch_pipelines: Also fetch and store pipeline/analysis info (default True) notes: Optional notes to attach to this experiment
Returns: JSON with tracking result including publications and pipeline info found.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| accession | Yes | ||
| fetch_publications | No | ||
| fetch_pipelines | No | ||
| notes | No |
Output Schema
| Name | Required | Description | Default |
|---|---|---|---|
| result | Yes |