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List Tracked Experiments

encode_list_tracked
Read-onlyIdempotent

View and filter locally tracked ENCODE experiments with metadata, publication counts, and derived file information for genomic data analysis.

Instructions

List all experiments you've tracked locally, with optional filters.

Shows your local library of tracked ENCODE experiments, their metadata, publication counts, and derived file counts.

WHEN TO USE: Use to see all experiments in your local library. Filter by assay, organism, or organ. RELATED TOOLS: encode_summarize_collection, encode_export_data

Args: assay_title: Filter by assay type (partial match) organism: Filter by organism (partial match) organ: Filter by organ (partial match)

Returns: JSON with tracked experiments metadata table and tracker stats.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
assay_titleNo
organismNo
organNo

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already provide readOnlyHint=true, destructiveHint=false, idempotentHint=true, and openWorldHint=false. The description adds valuable context about what gets returned ('metadata, publication counts, and derived file counts') and clarifies this shows 'your local library' rather than all ENCODE experiments, which enhances understanding beyond the annotations.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Well-structured with clear sections (description, WHEN TO USE, RELATED TOOLS, Args, Returns). Every sentence adds value with no redundancy. The information is front-loaded with the core purpose immediately stated.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a read-only listing tool with comprehensive annotations and an output schema, the description provides complete context. It explains the tool's scope, usage guidance, parameter behavior, and return format, leaving no significant gaps for the agent to understand when and how to use it.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters4/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

With 0% schema description coverage, the description fully compensates by clearly explaining all three parameters in the Args section, specifying they are optional filters with 'partial match' behavior. This adds essential meaning beyond the bare schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the specific action ('List all experiments you've tracked locally'), resource ('ENCODE experiments'), and scope ('local library'). It distinguishes from siblings by focusing on locally tracked experiments rather than general searching or downloading.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicitly provides 'WHEN TO USE' guidance ('Use to see all experiments in your local library') and names two specific related tools (encode_summarize_collection, encode_export_data) for alternative use cases, giving clear context for when to choose this tool.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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