encode_compare_experiments
Check if two ENCODE experiments are compatible for combined analysis by comparing organism, genome assembly, assay type, biosample, and other key metadata to identify potential issues.
Instructions
Analyze whether two ENCODE experiments are compatible for combined analysis.
Compares organism, genome assembly, assay type, biosample, organ, target, replication strategy, and lab to identify potential issues.
Both experiments must be tracked first (use encode_track_experiment).
WHEN TO USE: Use to check if two experiments are compatible for combined analysis. Both must be tracked first. RELATED TOOLS: encode_track_experiment, encode_list_tracked
Args: accession1: First experiment accession (e.g., "ENCSR133RZO") accession2: Second experiment accession (e.g., "ENCSR000AKS")
Returns: JSON compatibility report with verdict, issues, warnings, and recommendations.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| accession1 | Yes | ||
| accession2 | Yes |