encode-toolkit
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TDQS
Scored across 20 tools
Most tools have clearly distinct purposes, with clear usage guidance (e.g., encode_list_files vs encode_search_files vs encode_download_files). However, a few pairs like encode_get_metadata vs encode_get_facets and encode_get_references vs encode_get_citations are close enough that an agent could misselect without careful reading, though descriptions mitigate this.
All tools follow a consistent 'encode_verb_noun' snake_case pattern (e.g., encode_search_experiments, encode_download_files, encode_log_derived_file). There are no mixed camelCase or inconsistent verb styles, making the naming highly predictable.
20 tools is slightly above the typical 3-15 range, but the server spans a wide domain: ENCODE search, file download, local tracking, provenance, references, citations, and credentials. Each tool has a distinct role, so the count feels reasonable rather than bloated.
Core operations are well covered: search/get experiments, list/search/download files, track experiments, and export data. However, there is no delete/untrack for tracked experiments, no unlink for references, and no delete for derived files—create and read exist but update/delete are missing, which is a notable lifecycle gap.