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encode_get_facets
Read-onlyIdempotent

Get live filter counts from ENCODE to discover available experiments or files. Shows how many items exist for each filter value, helping you explore data before searching.

Instructions

Get live filter counts from ENCODE to discover what data is available.

Returns faceted counts showing how many experiments/files exist for each filter value. Useful for exploring what's available before searching.

WHEN TO USE: Use to explore what data exists before searching. Shows counts per filter value. Best first step for unknown datasets. RELATED TOOLS: encode_get_metadata, encode_search_experiments

Examples:

  • What assays are available for pancreas? organ="pancreas"

  • What organs have Histone ChIP-seq data? assay_title="Histone ChIP-seq"

  • What targets are available for mouse brain ChIP-seq? assay_title="Histone ChIP-seq", organism="Mus musculus", organ="brain"

Args: search_type: Object type ("Experiment" or "File") assay_title: Pre-filter by assay type organism: Pre-filter by organism organ: Pre-filter by organ biosample_type: Pre-filter by biosample type

Returns: JSON with facet names and their term counts.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
search_typeNoExperiment
assay_titleNo
organismNo
organNo
biosample_typeNo

Output Schema

TableJSON Schema
NameRequiredDescriptionDefault
resultYes
Behavior4/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations already declare readOnlyHint=true, destructiveHint=false, idempotentHint=true, openWorldHint=true. The description adds detail about returning faceted counts and that it is exploratory, not modifying data. No contradictions.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is well-structured with a header, usage guidelines, examples, and return type. Every sentence adds value, and it is front-loaded with the purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness5/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Despite no output schema, the description explains the return format ('JSON with facet names and term counts'). All parameters are covered with examples, making it complete for exploration.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters5/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

Schema description coverage is 0%, but the description lists all 5 parameters with clear explanations and examples (e.g., organ='pancreas'). This adds significant meaning beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool's purpose: 'Get live filter counts from ENCODE to discover what data is available.' It specifies the verb (get), resource (filter counts), and distinguishes from sibling tools like encode_search_experiments.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines5/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

Explicit 'WHEN TO USE' section: 'Use to explore what data exists before searching. Shows counts per filter value. Best first step for unknown datasets.' Also lists related tools and provides examples.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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