encode_summarize_collection
Generate statistical summaries of tracked ENCODE experiments grouped by assay, target, organism, and biosample to provide research collection overviews.
Instructions
Summarize your tracked experiment collection with grouped statistics.
Provides an overview of tracked experiments grouped by assay type, target, organism, organ, biosample type, and lab. Shows total counts for publications, derived files, and external references.
Useful when tracking 10+ experiments and needing a bird's-eye view of your research data collection.
WHEN TO USE: Use for a bird's-eye view of tracked experiments grouped by assay, target, organ. Best for 10+ tracked experiments. RELATED TOOLS: encode_list_tracked, encode_export_data
Args: assay_title: Filter by assay type (partial match) organism: Filter by organism (partial match) organ: Filter by organ (partial match)
Returns: JSON summary with experiment counts grouped by multiple dimensions.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| assay_title | No | ||
| organism | No | ||
| organ | No |