GTEx MCP Server

search_transcripts

Find gene transcripts and isoforms using GENCODE IDs to analyze gene expression patterns and identify specific transcript variants in genomics research.

Instructions

Search for gene transcripts and isoforms

Input Schema

Name	Required	Description	Default
`gencodeId`	Yes	GENCODE gene ID (e.g., ENSG00000223972.5)
`transcriptType`	No	Transcript type filter (optional)

Input Schema (JSON Schema)

{
  "properties": {
    "gencodeId": {
      "description": "GENCODE gene ID (e.g., ENSG00000223972.5)",
      "type": "string"
    },
    "transcriptType": {
      "description": "Transcript type filter (optional)",
      "enum": [
        "protein_coding",
        "lncRNA",
        "pseudogene",
        "miRNA"
      ],
      "type": "string"
    }
  },
  "required": [
    "gencodeId"
  ],
  "type": "object"
}

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