Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||
Schema
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
| get_gene_expression | Get gene expression data across tissues for a specific gene |
| get_median_gene_expression | Get median gene expression levels across tissues |
| get_top_expressed_genes | Get top expressed genes in a specific tissue |
| get_tissue_specific_genes | Get genes with tissue-specific expression patterns |
| get_clustered_expression | Get clustered gene expression data for visualization |
| calculate_expression_correlation | Calculate expression correlation between genes across tissues |
| get_differential_expression | Get differential gene expression between tissue groups |
| get_eqtl_genes | Get genes with eQTL associations for a genomic region |
| get_single_tissue_eqtls | Get single-tissue eQTL results for a gene |
| calculate_dynamic_eqtl | Calculate dynamic eQTL effects across tissues |
| get_multi_tissue_eqtls | Get multi-tissue eQTL meta-analysis results |
| get_sqtl_results | Get splicing QTL (sQTL) results for a gene |
| analyze_ld_structure | Analyze linkage disequilibrium structure around eQTL variants |
| search_genes | Search for genes by symbol, name, or description |
| get_gene_info | Get detailed information about a specific gene |
| get_variants | Get genetic variants in a genomic region |
| get_tissue_info | Get information about GTEx tissues and sample counts |
| get_sample_info | Get GTEx sample metadata and demographics |
| get_subject_phenotypes | Get subject phenotype data and demographics |
| validate_gene_id | Validate and normalize gene identifiers |
| validate_variant_id | Validate variant identifiers and genomic coordinates |
| get_dataset_info | Get information about available GTEx datasets |
| search_transcripts | Search for gene transcripts and isoforms |
| get_gene_ontology | Get Gene Ontology annotations for a gene |
| convert_coordinates | Convert between different genomic coordinate systems |