calculate_dynamic_eqtl
Compute dynamic eQTL effects for gene-SNP pairs across multiple tissues using GTEx data to identify tissue-specific genetic regulation of gene expression.
Instructions
Calculate dynamic eQTL effects across tissues
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| datasetId | No | GTEx dataset ID (default: gtex_v8) | gtex_v8 |
| gencodeId | Yes | GENCODE gene ID (e.g., ENSG00000223972.5) | |
| snpId | Yes | SNP ID (rs number or variant ID) | |
| tissueSiteDetailIds | Yes | Array of tissue site detail IDs to compare |
Input Schema (JSON Schema)
{
"properties": {
"datasetId": {
"default": "gtex_v8",
"description": "GTEx dataset ID (default: gtex_v8)",
"type": "string"
},
"gencodeId": {
"description": "GENCODE gene ID (e.g., ENSG00000223972.5)",
"type": "string"
},
"snpId": {
"description": "SNP ID (rs number or variant ID)",
"type": "string"
},
"tissueSiteDetailIds": {
"description": "Array of tissue site detail IDs to compare",
"items": {
"type": "string"
},
"type": "array"
}
},
"required": [
"gencodeId",
"snpId",
"tissueSiteDetailIds"
],
"type": "object"
}