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GTEx MCP Server

get_eqtl_genes

Identify genes with expression quantitative trait loci (eQTL) associations within a specified genomic region using GTEx data, optionally filtered by tissue type.

Instructions

Get genes with eQTL associations for a genomic region

Input Schema

NameRequiredDescriptionDefault
chrYesChromosome (e.g., chr1, chr2, chrX)
datasetIdNoGTEx dataset ID (default: gtex_v8)gtex_v8
endYesEnd position (1-based)
startYesStart position (1-based)
tissueSiteDetailIdNoTissue site detail ID (optional, for tissue-specific results)

Input Schema (JSON Schema)

{ "properties": { "chr": { "description": "Chromosome (e.g., chr1, chr2, chrX)", "type": "string" }, "datasetId": { "default": "gtex_v8", "description": "GTEx dataset ID (default: gtex_v8)", "type": "string" }, "end": { "description": "End position (1-based)", "type": "integer" }, "start": { "description": "Start position (1-based)", "type": "integer" }, "tissueSiteDetailId": { "description": "Tissue site detail ID (optional, for tissue-specific results)", "type": "string" } }, "required": [ "chr", "start", "end" ], "type": "object" }

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