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GTEx MCP Server

convert_coordinates

Convert genomic coordinates between hg19 and hg38 genome builds for accurate positioning across different genomic reference standards.

Instructions

Convert between different genomic coordinate systems

Input Schema

NameRequiredDescriptionDefault
chrYesChromosome (e.g., chr1, chr2, chrX)
fromBuildNoSource genome build (default: hg38)hg38
positionYesGenomic position to convert
toBuildNoTarget genome build (default: hg19)hg19

Input Schema (JSON Schema)

{ "properties": { "chr": { "description": "Chromosome (e.g., chr1, chr2, chrX)", "type": "string" }, "fromBuild": { "default": "hg38", "description": "Source genome build (default: hg38)", "enum": [ "hg19", "hg38" ], "type": "string" }, "position": { "description": "Genomic position to convert", "type": "integer" }, "toBuild": { "default": "hg19", "description": "Target genome build (default: hg19)", "enum": [ "hg19", "hg38" ], "type": "string" } }, "required": [ "chr", "position" ], "type": "object" }

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