convert_coordinates
Convert genomic coordinates between hg19 and hg38 genome builds for accurate positioning across different genomic reference standards.
Instructions
Convert between different genomic coordinate systems
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| chr | Yes | Chromosome (e.g., chr1, chr2, chrX) | |
| fromBuild | No | Source genome build (default: hg38) | hg38 |
| position | Yes | Genomic position to convert | |
| toBuild | No | Target genome build (default: hg19) | hg19 |
Input Schema (JSON Schema)
{
"properties": {
"chr": {
"description": "Chromosome (e.g., chr1, chr2, chrX)",
"type": "string"
},
"fromBuild": {
"default": "hg38",
"description": "Source genome build (default: hg38)",
"enum": [
"hg19",
"hg38"
],
"type": "string"
},
"position": {
"description": "Genomic position to convert",
"type": "integer"
},
"toBuild": {
"default": "hg19",
"description": "Target genome build (default: hg19)",
"enum": [
"hg19",
"hg38"
],
"type": "string"
}
},
"required": [
"chr",
"position"
],
"type": "object"
}