get_differential_expression
Analyze differences in gene expression levels between specified tissue groups using GTEx genomic data to identify tissue-specific gene activity.
Instructions
Get differential gene expression between tissue groups
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| comparisonGroups | Yes | Array of tissue groups to compare | |
| datasetId | No | GTEx dataset ID (default: gtex_v8) | gtex_v8 |
| gencodeId | Yes | GENCODE gene ID (e.g., ENSG00000223972.5) |
Input Schema (JSON Schema)
{
"properties": {
"comparisonGroups": {
"description": "Array of tissue groups to compare",
"items": {
"type": "string"
},
"type": "array"
},
"datasetId": {
"default": "gtex_v8",
"description": "GTEx dataset ID (default: gtex_v8)",
"type": "string"
},
"gencodeId": {
"description": "GENCODE gene ID (e.g., ENSG00000223972.5)",
"type": "string"
}
},
"required": [
"gencodeId",
"comparisonGroups"
],
"type": "object"
}