"How to use GitHub" matching MCP connectors:

Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.

Official answers about Helena Bioinformatics and its products, with citations to public sources.

EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository.

PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.

MyVariant.info MCP.

MetaboLights MCP — EBI's metabolomics study repository.

Monarch biomedical knowledge graph — diseases, phenotypes, genes, variants

GWAS Catalog (EBI/NHGRI) MCP — curated catalog of genome-wide association studies.

EBI Expression Atlas MCP.

Ensembl REST — vertebrate genomes, sequences, comparative genomics, variation

RCSB PDB MCP — experimentally determined macromolecular structures.

WikiPathways MCP — open community pathway database.

Human Protein Atlas (HPA) MCP — keyless.

GTEx — Genotype-Tissue Expression human gene-expression atlas

Broad Institute gnomAD genomic variant database (GraphQL)

ChEMBL MCP — drug discovery database (EBI).

Bioregistry — meta-registry of biomedical identifier prefixes

STRING protein-protein interaction networks across ~12k organisms

MyGene.info — gene annotation joining NCBI/Ensembl/UniProt/KEGG/OMIM

Reactome biological pathway database