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Protein Atlas

by io.github.pipeworx-io
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Human Protein Atlas (HPA) MCP — keyless.

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Status
Unhealthy
Uptime
30.4% over 41 days
Last Tested
Transport
Streamable HTTP
URL
Repository
pipeworx-io/mcp-protein-atlas
GitHub Stars
0
Server Listing
mcp-protein-atlas

TDQS

A3.8/5.0

Scored across 34 tools

Disambiguation3/5

Several families overlap heavily: ask_pipeworx / ask_pipeworx_beta / ask_pipeworx_grounded / deep_research / validate_claim / bet_research all answer factual questions, and polymarket_edges / polymarket_arbitrage / polymarket_fill_risk / polymarket_kalshi_spread / polymarket_edge_tracker all surface trading signals. Descriptions give explicit step-up guidance, which rescues some of it, but ask_pipeworx_beta being openly identical to ask_pipeworx is pure ambiguity. Entity tools (resolve_entity, entity_profile, compare_entities, recent_changes) also require careful reading to choose correctly.

Naming Consistency4/5

Everything is snake_case and readable, with a predictable resource prefix pattern (polymarket_*, ask_pipeworx_*, pipeworx_*). However the set mixes verb_noun forms (get_protein, search_genes, resolve_entity, validate_claim) with bare noun phrases (entity_profile, ai_visibility_check, pipeworx_trending), so the convention isn't uniform.

Tool Count2/5

34 tools is heavy for the stated 'Protein Atlas' purpose, which is served by only three tools (search_genes, get_protein, top_tissues). The remaining ~31 are a general-purpose data gateway, prediction-market, and AI-visibility toolset that dwarfs the nominal domain. Each tool may earn its place in a gateway, but not under this label.

Completeness3/5

For the protein domain the surface covers search (search_genes), profile (get_protein), and expression (top_tissues), but omits pathology/antibody, structure, interaction, and disease-centric views HPA is known for. Much of the rest of the toolset is unrelated to the stated purpose, leaving a domain-appropriate but shallow core.

Tool Schema Changelog

Recent tool additions, removals, and schema changes observed during successful MCP inspections.

  1. 1 tool update
    • Changedbet_research2 fields changed
      • changedInput schema / examples
        Previous value: -[
-  {
-    "market": "when-will-bitcoin-hit-150k"
-  },
-  {
-    "market": "https://polymarket.com/event/when-will-bitcoin-hit-150k"
-  }
-]New value: +[
+  {
+    "market": "will-kristi-noem-win-the-2028-republican-presidential-nomination"
+  },
+  {
+    "market": "https://polymarket.com/event/will-kristi-noem-win-the-2028-republican-presidential-nomination"
+  }
+]
      • changedInput schema / properties / market / description
        Previous value: -"Polymarket slug (\"when-will-bitcoin-hit-150k\"), full URL (\"https://polymarket.com/event/...\"), or question text (\"Will Bitcoin hit $150k?\"). Dated slugs stop resolving once they settle — Polymarket de-indexes resolved markets — so prefer an undated one."New value: +"Polymarket slug (\"will-kristi-noem-win-the-2028-republican-presidential-nomination\"), full URL (\"https://polymarket.com/event/...\"), or question text (\"Will Bitcoin hit $150k?\"). Dated slugs stop resolving once they settle — Polymarket de-indexes resolved markets — so prefer an undated one."
  2. 2 tool updates
    • Changedbet_research2 fields changed
      • changedInput schema / examples
        Previous value: -[
-  {
-    "market": "will-bitcoin-reach-100k-in-july-2026"
-  },
-  {
-    "market": "https://polymarket.com/event/will-bitcoin-hit-150k-by-june-30-2026"
-  }
-]New value: +[
+  {
+    "market": "when-will-bitcoin-hit-150k"
+  },
+  {
+    "market": "https://polymarket.com/event/when-will-bitcoin-hit-150k"
+  }
+]
      • changedInput schema / properties / market / description
        Previous value: -"Polymarket slug (\"will-bitcoin-hit-150k-by-june-30-2026\"), full URL (\"https://polymarket.com/event/...\"), or question text (\"Will Bitcoin hit $150k by June 30?\")"New value: +"Polymarket slug (\"when-will-bitcoin-hit-150k\"), full URL (\"https://polymarket.com/event/...\"), or question text (\"Will Bitcoin hit $150k?\"). Dated slugs stop resolving once they settle — Polymarket de-indexes resolved markets — so prefer an undated one."
    • Changedpolymarket_kalshi_spread2 fields changed
      • changedInput schema / examples
        Previous value: -[
-  {
-    "topic": "fed"
-  },
-  {
-    "topic": "btc"
-  }
-]New value: +[
+  {
+    "topic": "fed"
+  },
+  {
+    "topic": "btc"
+  },
+  {
+    "topic": "bitcoin"
+  },
+  {
+    "topic": "fed rate decision"
+  }
+]
      • changedInput schema / properties / topic / description
        Previous value: -"Pre-mapped: fed | btc | cpi | gdp | sp500 | recession | next_pope | next_uk_pm | next_israel_pm | 2028_president"New value: +"Subject to compare. Canonical keys: fed | btc | eth | cpi | gdp | sp500 | recession | next_pope | next_uk_pm | next_israel_pm | 2028_president — but aliases and keywords resolve too (\"bitcoin\", \"fed rate decision\", \"ethereum\", \"inflation\", \"s&p 500\", \"us recession\", \"next pope\", \"2028 election\"). Check resolution.topic_matched_by in the response: \"exact\"/\"alias\" is a curated pairing, \"phrase\"/\"token\" is a keyword guess."
  3. 1 tool update
    • Changedentity_profile3 fields changed
      • changedInput schema / properties / type / description
        Previous value: -"Entity type. Only \"company\" supported today; person/place coming soon."New value: +"\"company\" or \"ticker\" — both are accepted and behave identically; `value` can be a ticker, CIK, or company name either way. person/place coming soon."
      • changedInput schema / properties / type / enum
        Previous value: -[
-  "company"
-]New value: +[
+  "company",
+  "ticker"
+]
      • changedInput schema / properties / value / description
        Previous value: -"Ticker (e.g., \"AAPL\") or zero-padded CIK (e.g., \"0000320193\"). Names not supported — use resolve_entity first if you only have a name."New value: +"Ticker (e.g., \"AAPL\"), zero-padded CIK (e.g., \"0000320193\"), or company name (e.g., \"Moderna\") — names resolve via SEC EDGAR company-name match."

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