"How to query data in Snowflake" matching MCP connectors:
GET /v1/connectors – MCP directory API referenceMatching Connector Tools:
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
PK serum simulation, reconstitution math and compound data for agents. Paid tools $0.01 via x402.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
Query CAN-IMMUNE: cancer neoantigen mutations, peptides, cell lines, MHC-I binding. Read-only.
Query STRING interactions, enrichment, annotations, homology, and PPI networks.
PubMed id shape, value discarded
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
Biomedical data: compounds, drug info, and molecular targets
HERB 2.0 (herb.ac.cn) — Traditional Chinese Medicine herb/ingredient/target/
DrugBank MCP — wraps the DrugBank Clinical API (api.drugbank.com)
CATNAP (Compile, Analyze, and Tally Neutralizing Antibody Panels) + the
UniProt MCP — protein sequence + function database.
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository.
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
Mondo — condition-string resolver onto the Mondo Disease Ontology.
MetaboLights MCP — EBI's metabolomics study repository.
RCSB PDB MCP — experimentally determined macromolecular structures.
Human Protein Atlas (HPA) MCP — keyless.
Monarch biomedical knowledge graph — diseases, phenotypes, genes, variants
