"How to Run a Python Script" matching MCP connectors:
GET /v1/connectors – MCP directory API referenceMatching Connector Tools:
Run protein folding, docking, design and sequence analysis tools, and read their results.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
BioBricks: the site's own MCP server — dataset, enquiry (enquiry = a human handoff, not a...
HLA nomenclature and match checks against a pinned IPD-IMGT/HLA release. No patient identifiers.
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
Mondo — condition-string resolver onto the Mondo Disease Ontology.
IntAct (EBI) molecular-interaction database MCP. Keyless.
NCI CACTUS Chemical Identifier Resolver MCP.
BOLD Systems (Barcode of Life Data System, University of Guelph) — the global DNA barcode…
SGD (Saccharomyces Genome Database) MCP.
NCI Thesaurus concepts and the other cancer-research vocabularies served by NCI Enterprise…
CIViC — Clinical Interpretation of Variants in Cancer.
BioModels — the public repository of curated, executable mathematical models of biological systems…
Rhea MCP — expert-curated database of biochemical reactions.
Human Protein Atlas (HPA) MCP — keyless.
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository.
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
MGnify — EMBL-EBI's metagenomics resource: public microbiome studies, the biome vocabulary they…
