"How to Create Projects in Jira" matching MCP connectors:
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Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
PubMed id shape, value discarded
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
HERB 2.0 (herb.ac.cn) — Traditional Chinese Medicine herb/ingredient/target/
DrugBank MCP — wraps the DrugBank Clinical API (api.drugbank.com)
CATNAP (Compile, Analyze, and Tally Neutralizing Antibody Panels) + the
UniProt MCP — protein sequence + function database.
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository.
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
Mondo — condition-string resolver onto the Mondo Disease Ontology.
MetaboLights MCP — EBI's metabolomics study repository.
RCSB PDB MCP — experimentally determined macromolecular structures.
Human Protein Atlas (HPA) MCP — keyless.
Monarch biomedical knowledge graph — diseases, phenotypes, genes, variants
InterPro MCP (EBI) — protein family / domain / functional-site classification.
WikiPathways MCP — open community pathway database.
Bioregistry — meta-registry of biomedical identifier prefixes
