geo_search
Search NCBI GEO for functional genomics studies, including expression microarrays and RNA-seq. Query by free text or accession to retrieve results linked to related data.
Instructions
Search NCBI GEO (Gene Expression Omnibus) for functional genomics studies — expression microarrays, RNA-seq, and other high-throughput sequencing series.
Queries accept plain terms ("breast cancer RNA-seq", "melanoma single cell") or NCBI field syntax ("GSE183947[Accession]"). Each result carries cross-links for chaining: sra_project → sra_get, bioproject, pubmed_ids → article_get, and accession → geo_get for full details.
Input Schema
| Name | Required | Description | Default |
|---|---|---|---|
| limit | No | Maximum results | |
| query | Yes | Free-text GEO search terms, e.g. "breast cancer RNA-seq", "melanoma single cell" | |
| offset | No | Result offset for pagination | |
| organism | No | Filter by organism (e.g. "Homo sapiens", "Mus musculus") | |
| entry_type | No | GEO entry type — gse=study (default), gsm=sample, gpl=platform, gds=curated dataset |