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gene_search

Read-only

Search for genes by symbol, name, or keyword with optional filters for gene type and chromosome to locate relevant genetic entries.

Instructions

Search for genes by symbol, name, or keyword

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
queryYesGene symbol, name, or keyword to search for
gene_typeNoFilter by gene type
chromosomeNoFilter by chromosome (e.g., "7", "X")
limitNoMaximum results
offsetNoResult offset
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations declare readOnlyHint=true and openWorldHint=true, which already convey safe read and variable results. The description's 'search' is consistent with this. No additional behavioral details are added, but the annotations suffice.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single, direct sentence with no fluff. It is appropriately sized and front-loaded with the core purpose.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the lack of an output schema, the description could mention the result format (e.g., list of gene records). It is minimally complete but leaves ambiguity about what the search returns.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

All five parameters are fully described in the input schema (100% coverage). The description adds no extra meaning beyond what the schema provides, so the baseline score applies.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool searches for genes by symbol, name, or keyword. It specifies the verb and resource, but could be more explicit about returning a list of matching genes. Still, it is sufficiently clear.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description provides no guidance on when to use this tool versus sibling tools like gene_get or gene_enrich. The agent is left to infer usage context from the tool name alone.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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