bc_search_pride_proteins

Find proteins in specific PRIDE mass spectrometry projects using project accession and optional keywords. Retrieve and sort results for targeted proteomics research.

Instructions

Search proteins identified in a specific PRIDE project.

This function searches for proteins identified in a specific PRIDE mass spectrometry project. Useful for finding specific proteins of interest in proteomics datasets.

Args: project_accession (str): The PRIDE project accession to search in. keyword (str, optional): Search keyword for protein names or accessions. page_size (int, optional): Number of results (max 100). Defaults to 20. sort_field (str, optional): Sort field. Defaults to "accession". sort_direction (str, optional): Sort direction. Defaults to "ASC".

Returns: dict: Search results with proteins found in the specified project

Input Schema

Name	Required	Description	Default
`keyword`	No	Search keyword for protein names or accessions
`page_size`	No	Number of results to return (max 100)
`project_accession`	Yes	The PRIDE project accession to search proteins in
`sort_direction`	No	Sort direction: ASC or DESC	ASC
`sort_field`	No	Field to sort by: accession, proteinName, gene	accession

Input Schema (JSON Schema)

{
  "properties": {
    "keyword": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Search keyword for protein names or accessions",
      "title": "Keyword"
    },
    "page_size": {
      "default": 20,
      "description": "Number of results to return (max 100)",
      "title": "Page Size",
      "type": "integer"
    },
    "project_accession": {
      "description": "The PRIDE project accession to search proteins in",
      "title": "Project Accession",
      "type": "string"
    },
    "sort_direction": {
      "default": "ASC",
      "description": "Sort direction: ASC or DESC",
      "title": "Sort Direction",
      "type": "string"
    },
    "sort_field": {
      "default": "accession",
      "description": "Field to sort by: accession, proteinName, gene",
      "title": "Sort Field",
      "type": "string"
    }
  },
  "required": [
    "project_accession"
  ],
  "type": "object"
}

BioContextAI Knowledgebase MCP