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bc_search_pride_proteins

Search for specific proteins in PRIDE mass spectrometry projects by project accession, protein names, or accessions. Retrieve and sort results for proteomics research.

Instructions

Search proteins identified in a specific PRIDE project.

This function searches for proteins identified in a specific PRIDE mass spectrometry project. Useful for finding specific proteins of interest in proteomics datasets.

Args: project_accession (str): The PRIDE project accession to search in. keyword (str, optional): Search keyword for protein names or accessions. page_size (int, optional): Number of results (max 100). Defaults to 20. sort_field (str, optional): Sort field. Defaults to "accession". sort_direction (str, optional): Sort direction. Defaults to "ASC".

Returns: dict: Search results with proteins found in the specified project

Input Schema

NameRequiredDescriptionDefault
keywordNoSearch keyword for protein names or accessions
page_sizeNoNumber of results to return (max 100)
project_accessionYesThe PRIDE project accession to search proteins in
sort_directionNoSort direction: ASC or DESCASC
sort_fieldNoField to sort by: accession, proteinName, geneaccession

Input Schema (JSON Schema)

{ "properties": { "keyword": { "anyOf": [ { "type": "string" }, { "type": "null" } ], "default": null, "description": "Search keyword for protein names or accessions", "title": "Keyword" }, "page_size": { "default": 20, "description": "Number of results to return (max 100)", "title": "Page Size", "type": "integer" }, "project_accession": { "description": "The PRIDE project accession to search proteins in", "title": "Project Accession", "type": "string" }, "sort_direction": { "default": "ASC", "description": "Sort direction: ASC or DESC", "title": "Sort Direction", "type": "string" }, "sort_field": { "default": "accession", "description": "Field to sort by: accession, proteinName, gene", "title": "Sort Field", "type": "string" } }, "required": [ "project_accession" ], "type": "object" }
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