bc_search_interpro_entries

Search the InterPro database using filters like entry type, source database, GO terms, or species taxonomy to retrieve specific protein domain and family information.

Instructions

Search InterPro entries by various criteria.

This function allows searching the InterPro database using different filters such as entry type, source database, GO terms, and species.

Args: query (str, optional): Search term for InterPro entry names or descriptions. entry_type (str, optional): Filter by entry type (family, domain, etc.). source_database (str, optional): Filter by member database (pfam, prosite, etc.). go_term (str, optional): Filter by GO term (e.g., "GO:0006122"). species_filter (str, optional): Filter by taxonomy ID (e.g., "9606" for human). page_size (int, optional): Number of results to return (max 200). Defaults to 20.

Returns: dict: Search results with InterPro entries matching the criteria

Input Schema

Name	Required	Description
`entry_type`	No	Filter by entry type: family, domain, homologous_superfamily, repeat, conserved_site, binding_site, active_site, ptm
`go_term`	No	Filter by GO term (e.g., 'GO:0006122')
`page_size`	No	Number of results to return (max 200)
`query`	No	Search term for InterPro entry names or descriptions
`source_database`	No	Filter by member database: pfam, prosite, panther, smart, etc.
`species_filter`	No	Filter by taxonomy ID (e.g., '9606' for human)

Input Schema (JSON Schema)

{
  "properties": {
    "entry_type": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Filter by entry type: family, domain, homologous_superfamily, repeat, conserved_site, binding_site, active_site, ptm",
      "title": "Entry Type"
    },
    "go_term": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Filter by GO term (e.g., 'GO:0006122')",
      "title": "Go Term"
    },
    "page_size": {
      "default": 20,
      "description": "Number of results to return (max 200)",
      "title": "Page Size",
      "type": "integer"
    },
    "query": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Search term for InterPro entry names or descriptions",
      "title": "Query"
    },
    "source_database": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Filter by member database: pfam, prosite, panther, smart, etc.",
      "title": "Source Database"
    },
    "species_filter": {
      "anyOf": [
        {
          "type": "string"
        },
        {
          "type": "null"
        }
      ],
      "default": null,
      "description": "Filter by taxonomy ID (e.g., '9606' for human)",
      "title": "Species Filter"
    }
  },
  "type": "object"
}

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