"A guide to writing reports" matching MCP connectors:
GET /v1/connectors – MCP directory API referenceMatching Connector Tools:
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
RCSB PDB MCP — experimentally determined macromolecular structures.
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
GWAS Catalog (EBI/NHGRI) MCP — curated catalog of genome-wide association studies.
UniProt MCP — protein sequence + function database.
Broad Institute gnomAD genomic variant database (GraphQL)
Ensembl REST — vertebrate genomes, sequences, comparative genomics, variation
ChEMBL MCP — drug discovery database (EBI).
STRING protein-protein interaction networks across ~12k organisms
MetaboLights MCP — EBI's metabolomics study repository.
GTEx — Genotype-Tissue Expression human gene-expression atlas
Reactome biological pathway database
MyGene.info — gene annotation joining NCBI/Ensembl/UniProt/KEGG/OMIM
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
IntAct (EBI) molecular-interaction database MCP. Keyless.
NCI CACTUS Chemical Identifier Resolver MCP.
