"A guide to coding a monorepo" matching MCP connectors:
GET /v1/connectors – MCP directory API referenceMatching Connector Tools:
Link compounds to protein targets, rank bioactivity, and look up drug mechanisms and indications.
Official answers about Helena Bioinformatics and its products, with citations to public sources.
EBI PRIDE Archive MCP — proteomics (mass-spectrometry) data repository.
UniProt MCP — protein sequence + function database.
PomBase MCP — the fission yeast (Schizosaccharomyces pombe) model-organism database.
Monarch biomedical knowledge graph — diseases, phenotypes, genes, variants
GWAS Catalog (EBI/NHGRI) MCP — curated catalog of genome-wide association studies.
RCSB PDB MCP — experimentally determined macromolecular structures.
Broad Institute gnomAD genomic variant database (GraphQL)
Bioregistry — meta-registry of biomedical identifier prefixes
WikiPathways MCP — open community pathway database.
MetaboLights MCP — EBI's metabolomics study repository.
GTEx — Genotype-Tissue Expression human gene-expression atlas
ChEMBL MCP — drug discovery database (EBI).
A unified biomedical graph database that integrates 50+ primary data sources — genes, proteins, compounds, diseases, pathways, and clinical data — into a single queryable graph with billions of cross-reference edges. Its native MCP server gives LLMs direct access to structured, authoritative biomedical data, complementing their reasoning with reliable identifiers and up-to-date database content.
IntAct (EBI) molecular-interaction database MCP. Keyless.
NCI CACTUS Chemical Identifier Resolver MCP.
