Skip to main content
Glama
reactome

reactome-mcp

Official
by reactome

reactome_reference_entities

Fetch external database references for participants in a biological event. Use to find cross-references to other resources.

Instructions

Get all reference entities (external database references) for participants in an event.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
idYesEvent stable ID or database ID
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

Annotations are absent, so the description must disclose behavioral traits. It implies a read operation by using 'Get' and clarifies the return type as external database references. However, it does not mention potential errors, permissions, pagination, or what the output structure looks like, leaving the agent with limited behavioral context.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Single sentence, front-loaded with the core action, no extraneous information. Every word earns its place.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

Given the tool's simplicity (one parameter, no output schema), the description is adequate but lacks usage context and behavioral caveats. It provides the core purpose but not enough to fully guide selection among many similar sibling tools.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema has one parameter 'id' with a clear description ('Event stable ID or database ID'), and the schema coverage is 100%. The description adds minor reinforcement by tying the parameter to 'participants in an event' but does not provide additional semantic depth beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description uses a specific verb ('Get') and clearly identifies the resource ('all reference entities (external database references)') and the scope ('for participants in an event'). This distinguishes it from sibling tools like reactome_participants and reactome_participating_physical_entities.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines2/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

No explicit guidance on when to use this tool versus alternatives. The description simply states what the tool does without specifying use cases or exclusions. Given the large set of sibling tools, this lack of guidance is a gap.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

Install Server

Other Tools

Latest Blog Posts

MCP directory API

We provide all the information about MCP servers via our MCP API.

curl -X GET 'https://glama.ai/api/mcp/v1/servers/reactome/reactome-mcp'

If you have feedback or need assistance with the MCP directory API, please join our Discord server