reactome-mcp
Officialby reactome
Server Configuration
Describes the environment variables required to run the server.
| Name | Required | Description | Default |
|---|---|---|---|
| LOG_LEVEL | No | Log level: debug, info, warn, error. | info |
| NEO4J_URI | No | Set to enable the optional Cypher tools. If unset, Cypher tools are not registered. | |
| NEO4J_USER | No | Neo4j user. | neo4j |
| NEO4J_DATABASE | No | Neo4j database name. | graph.db |
| NEO4J_PASSWORD | No | Neo4j password. | neo4j |
| REACTOME_BASE_URL | No | Base URL for the Content + Analysis Services. Override to point at staging / a specific release host. | https://reactome.org |
| CYPHER_QUERY_TIMEOUT_MS | No | Server-side transaction timeout (ms) for Cypher tools. | 30000 |
| REACTOME_CONTENT_SERVICE_URL | No | Fine-grained override for the Content Service only. If unset, derived from REACTOME_BASE_URL. | |
| REACTOME_ANALYSIS_SERVICE_URL | No | Fine-grained override for the Analysis Service only. If unset, derived from REACTOME_BASE_URL. |
Capabilities
Server capabilities have not been inspected yet.
Tools
Functions exposed to the LLM to take actions
| Name | Description |
|---|---|
No tools | |
Prompts
Interactive templates invoked by user choice
| Name | Description |
|---|---|
No prompts | |
Resources
Contextual data attached and managed by the client
| Name | Description |
|---|---|
No resources | |
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