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reactome-mcp

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by reactome

reactome_entity_other_forms

Find all alternative forms of a physical entity, including modified versions, different locations, and complexes, by providing its stable ID.

Instructions

Get all other forms of a physical entity (modified forms, in different compartments, in complexes, etc.).

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
idYesEntity stable ID or database ID
Behavior2/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations and no output schema, the description carries the full behavioral burden, yet it only describes the semantic scope and not operational details such as return format, pagination, or whether nested complexes are traversed. The examples add context but do not disclose limitations or behaviors.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

The description is a single focused sentence that conveys the tool's purpose with useful examples and no redundant filler. It is appropriately front-loaded and easy to scan.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness3/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a single-parameter read-like tool the description is fairly complete, but the absence of annotations and output schema leaves the agent without information about the response structure or possible limitations. It is adequate for basic selection but not rich enough to fully support invocation.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema already provides complete coverage for the single id parameter, describing it as an entity stable ID or database ID. The description adds only the context that the ID refers to a physical entity, which is marginal beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose4/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description clearly states the tool retrieves all other forms of a physical entity, with helpful examples (modified forms, compartments, complexes). It does not explicitly differentiate from sibling tools like reactome_complexes_containing, but the purpose is unambiguous.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines3/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

The description implies when to use the tool—when alternate forms of an entity are needed—but provides no explicit guidance on when to prefer it over related tools or when not to use it. No alternatives or exclusions are mentioned.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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