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by reactome

reactome_events_hierarchy

Retrieve the complete pathway and reaction hierarchy for a species, exposing the full event tree to explore biological processes.

Instructions

Get the complete event hierarchy (pathways and reactions tree) for a species. Warning: This returns a large data structure.

Input Schema

TableJSON Schema
NameRequiredDescriptionDefault
speciesNoSpecies name or taxonomy IDHomo sapiens
Behavior3/5

Does the description disclose side effects, auth requirements, rate limits, or destructive behavior?

With no annotations provided, the description carries the full burden. It adds a useful warning that the return structure is large, but it does not disclose other behavioral aspects like response format, performance implications, or read-only status beyond the verb 'Get'.

Agents need to know what a tool does to the world before calling it. Descriptions should go beyond structured annotations to explain consequences.

Conciseness5/5

Is the description appropriately sized, front-loaded, and free of redundancy?

Two sentences, front-loaded with purpose, followed by a concise warning. Every word earns its place, with no redundancy or filler.

Shorter descriptions cost fewer tokens and are easier for agents to parse. Every sentence should earn its place.

Completeness4/5

Given the tool's complexity, does the description cover enough for an agent to succeed on first attempt?

For a simple one-parameter tool with no output schema, the description adequately covers what the tool returns (full event hierarchy) and warns about the large payload. It lacks explicit output structure details but is sufficient for the tool's complexity.

Complex tools with many parameters or behaviors need more documentation. Simple tools need less. This dimension scales expectations accordingly.

Parameters3/5

Does the description clarify parameter syntax, constraints, interactions, or defaults beyond what the schema provides?

The input schema already provides 100% coverage for the single 'species' parameter, including a default and description. The description merely mentions 'for a species', adding no significant semantic detail beyond the schema.

Input schemas describe structure but not intent. Descriptions should explain non-obvious parameter relationships and valid value ranges.

Purpose5/5

Does the description clearly state what the tool does and how it differs from similar tools?

The description states a specific verb ('Get') and resource ('complete event hierarchy'), clarifying it returns the full pathways and reactions tree for a species. This distinguishes it from sibling tools that focus on single pathways or ancestors.

Agents choose between tools based on descriptions. A clear purpose with a specific verb and resource helps agents select the right tool.

Usage Guidelines4/5

Does the description explain when to use this tool, when not to, or what alternatives exist?

It clearly indicates when to use: when you need the complete event hierarchy for a species. It does not explicitly name alternatives or exclusions, but the context is clear enough for an agent to decide.

Agents often have multiple tools that could apply. Explicit usage guidance like "use X instead of Y when Z" prevents misuse.

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