aria-mcp-server
Enables searching of 35M+ peer-reviewed papers via NCBI E-utilities, allowing comprehensive biomedical literature research through the PubMed database.
๐งฌ ARIA Clinical Research MCP Server
A standalone MCP server that gives any Claude agent real-time access to biomedical literature and clinical trials โ no API keys required.
Tools
Tool | Description |
| Search 35M+ peer-reviewed papers via NCBI E-utilities |
| Search 400K+ trials via ClinicalTrials.gov v2 API |
Resources & Prompts
Resource
info://ariaโ server capabilities overviewPrompt
clinical-research-briefโ reusable prompt template for structured clinical intelligence briefs
Example queries
Once connected, ask Claude:
"Search PubMed for ketogenic diet pediatric epilepsy outcomes"
"Find recruiting trials for lung cancer immunotherapy"
"What does the literature say about veliparib in ovarian cancer, and are there active trials?"
Quickstart
git clone https://github.com/pkotecha-eng/aria-mcp-server
cd aria-mcp-server
pip install -r requirements.txt
python3 server.pyConnect to Claude Desktop
Add to ~/Library/Application Support/Claude/claude_desktop_config.json:
{
"mcpServers": {
"aria-clinical-research": {
"command": "python3",
"args": ["/absolute/path/to/aria-mcp-server/server.py"]
}
}
}Restart Claude Desktop. The server will appear under Settings โ Developer โ Local MCP Servers.
Data sources
PubMed โ NCBI E-utilities (public API, no key required)
ClinicalTrials.gov โ v2 REST API (public API, no key required)
Tech stack
FastMCP โ MCP server framework
Python 3.12+
Use cases
Life sciences researchers needing real-time literature access
Clinical trial coordinators checking eligibility and recruiting status
Drug discovery teams cross-referencing published evidence with active trials
Any Claude agent needing grounded biomedical knowledge
Built by
Pooja Kotecha ยท dinq.me/pkotecha-eng
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