Best PubMed MCP Servers
PubMed is a free search engine accessing primarily the MEDLINE database of references and abstracts on life sciences and biomedical topics maintained by the United States National Library of Medicine.
Why this server?
Provides access to search and retrieve medical literature from PubMed's database of over 30 million citations, including research articles, clinical studies, and medical reviews
AlicenseBqualityDmaintenanceAn MCP server that provides comprehensive medical information by querying multiple authoritative medical APIs including FDA, WHO, PubMed, Google Scholar, and RxNorm.791187108MITWhy this server?
Provides tools for searching PubMed, retrieving citations, full text, and related metadata, with features like auto-correction (ESpell) and vocabulary translation (ICD to MeSH).
AlicenseAqualityCmaintenanceAn intelligent research assistant MCP server for AI agents, providing task-oriented literature search and analysis across multiple academic databases.24624Apache 2.0Why this server?
Offers SQL querying of PubMed biomedical literature and citations.

microquery-mcpofficial
AlicenseAqualityDmaintenanceMCP server to ask research questions about real-world datasets and get actual database records back, with auto-registration and trial credit.4MITWhy this server?
Provides tools to search academic papers from PubMed, enabling retrieval of biomedical literature.
Why this server?
Provides access to PubMed molecular hydrogen medical literature with inline safety notes.

@h2-papers/mcp-serverofficial
AlicenseAqualityDmaintenanceEnables searching and retrieving molecular hydrogen medical literature from H2 Papers database, with per-paper safety notes always included in results.621MITWhy this server?
Fetches PubMed records to cross-reference PDB structures with scientific literature.

io.github.rcsb/rcsb-mcpofficial
AlicenseAqualityBmaintenanceEnables discovery, inspection, and cross-referencing of Protein Data Bank structures through three RCSB APIs: search, data, and sequence coordinates.363MITWhy this server?
Federates search from PubMed, enabling discovery of biomedical literature.
AlicenseAqualityAmaintenanceMCP server in Go to search and download books, papers, comics and more from Library Genesis — three focused tools, one static binary, no account required.244MITWhy this server?
Allows searching biomedical literature from PubMed/MEDLINE database with filters for authors, journals, publication types, and date ranges.
AlicenseBqualityBmaintenanceEnables searching and downloading academic papers from 14 platforms including arXiv, PubMed, Google Scholar, Web of Science, Springer, and Sci-Hub with unified data format and intelligent rate limiting.6419426178MITWhy this server?
Searches and verifies biomedical and life sciences publications across PubMed's 35+ million papers, enabling citation validation and paper discovery in medical research.
AlicenseAqualityDmaintenancePrevents citation hallucination by verifying academic citations against CrossRef's database of 150+ million publications before they can be mentioned, ensuring every citation includes a valid DOI.315MIT