gnomAD MCP Server

Instructions

Implementation Reference

• server.py:41-61 (handler)

  The implementation of the search_for_genes tool handler.

  @mcp.tool()
  def search_for_genes(
      dataset: str,
      reference_genome: str,
      query: str
  ) -> dict:
      """
      [gnomAD API] Search for genes (v2/v3/v4)
      Args:
          dataset (str): gnomAD dataset ID (gnomad_r3/gnomad_r2_1)
          reference_genome (str, optional): Reference genome (GRCh37 or GRCh38)
          query (str): Search string
      Returns:
          dict: search results
      """
      variables = {
          'dataset': dataset,
          'reference_genome': reference_genome,
          'query': query
      }
      return run_query_with_metadata('gene_search', variables)