get_str_info
Retrieve short tandem repeat (STR) information from the gnomAD v4 database using a reference genome and STR identifier to analyze genetic variations.
Instructions
[gnomAD API] Retrieve STR info (v4 only) Args: reference_genome (str): Reference genome (GRCh38) id (str): STR ID (e.g. ATXN1) Returns: dict: STR info Note: Not supported in v2/v3.
Input Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
| reference_genome | Yes | ||
| id | Yes | ||
| dataset | No | gnomad_r4 |
Output Schema
TableJSON Schema
| Name | Required | Description | Default |
|---|---|---|---|
No arguments | |||
Implementation Reference
- server.py:250-274 (handler)The handler function `get_str_info` implements the tool logic for retrieving short tandem repeat information. It validates the dataset version and uses `run_query_with_metadata` to execute the query.
def get_str_info( reference_genome: str, id: str, dataset: str = 'gnomad_r4' ) -> dict: """ [gnomAD API] Retrieve STR info (v4 only) Args: reference_genome (str): Reference genome (GRCh38) id (str): STR ID (e.g. ATXN1) Returns: dict: STR info Note: Not supported in v2/v3. """ if dataset != 'gnomad_r4': raise ValueError("Only v4 is supported for STR info.") variables = { 'dataset': dataset, 'reference_genome': reference_genome, 'id': id, } return run_query_with_metadata('short_tandem_repeat', variables)