gnomAD MCP Server

by koido

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Python

Remote

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Alternatives to gnomAD MCP Server

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Related Servers

mcp-gnomad
Bioinformatics Research & Data
pipeworx-io
A
license
Not graded
quality
B
maintenance
Enables querying the gnomAD genome aggregation database for variant, gene, and region information.
Updated 8 days ago (2026-09-26 18:56 UTC)
363 npm
MIT
gnomAD MCP Server
Bioinformatics Research & Data
shukwong
F
license
B
quality
D
maintenance
Enables AI assistants to query genetic variant data, gene constraints, and population genetics information from the gnomAD (Genome Aggregation Database) through its GraphQL API. Supports searching for genes and variants, retrieving constraint scores, analyzing population frequencies, and accessing genomic coverage data.
Updated a year ago (2025-08-13 20:36 UTC)
9
10
-
ncbi-variation
Bioinformatics Biology & Medicine
pipeworx-io
A
license
Not graded
quality
C
maintenance
Enables querying dbSNP refSNP records and converting between HGVS, SPDI, and rsID identifiers for human genetic variants, with assembly-aware genomic placement and population frequencies.
Updated 8 days ago (2026-09-26 19:53 UTC)
63 npm
MIT
EVEE MCP Server
Biology & Medicine Research & Data AI & Machine Learning
goodfire-ai
F
license
A
quality
F
maintenance
Provides interpretable variant effect predictions for 4.2 million ClinVar variants using the EVEE API. Enables searching, comparing, and analyzing genetic variants with AI-generated mechanistic interpretations and disruption profiles.
Updated 4 months ago (2026-05-20 21:30 UTC)
6
18
-
UCSC Genome Browser MCP Server
Bioinformatics Research & Data Biology & Medicine
hlydecker
A
license
B
quality
D
maintenance
Provides comprehensive access to the UCSC Genome Browser API, enabling queries of genomic data, DNA sequences, gene annotations, variants, and metadata across multiple species and assemblies.
Updated a year ago (2025-11-13 04:06 UTC)
12
6
MIT
genefoundry
Bioinformatics Research & Data
berntpopp
A
license
Not graded
quality
C
maintenance
Federates 13 gene-related MCP backends (gnomAD, GTEx, etc.) behind a single Streamable HTTP endpoint with collision-free namespacing and search-based tool discovery.
Updated 2 days ago (2026-10-03 12:57 UTC)
6
MIT

Deploy Server

One endpoint for every MCP toolRayrun runs every MCP server behind one URL and holds the credentials. Each call is decided per client, tool, and argument, then recorded.ray.runAd

TDQS

B3.4/5.0

Scored 2026-04-13 13:45 across 12 tools

Disambiguation5/5

Each tool has a clearly distinct purpose targeting specific genomic data types (ClinVar variants, copy number variants, genes, metadata, mitochondrial variants, regions, STRs, structural variants, general variants, liftover, gene search, variant search). The descriptions clearly differentiate what each tool retrieves, with no apparent overlap in functionality.

Naming Consistency4/5

Most tools follow a consistent 'get_*_info' or 'search_for_*' pattern, but there are minor deviations: 'get_copy_number_variant_info' uses 'variantId' while 'get_variant_info' uses 'variantId' (both camelCase), and 'get_structural_variant_info' uses 'variantId' while others use 'variant_id' (snake_case). The overall pattern is clear and readable despite these inconsistencies.

Tool Count5/5

12 tools is well-scoped for a genomic database API server covering multiple data types (variants, genes, regions, etc.) across different gnomAD versions. Each tool serves a specific purpose in retrieving different genomic entities, with no obvious redundancy.

Completeness4/5

The toolset provides comprehensive retrieval capabilities for the gnomAD domain, covering all major genomic data types with both specific lookup and search functionality. The only minor gap is the version compatibility limitations noted in tool descriptions (some tools only work with specific gnomAD versions), but agents can work around this by checking metadata or using alternative tools.